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Drug-target network

2012-05-16T12:13:44Z

← Older revision		Revision as of 12:13, 16 May 2012
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	}}		}}
		+
		+	* http://www.nature.com/nature/journal/v462/n7270/full/nature08506.html

Drug

2012-05-16T12:13:31Z

← Older revision		Revision as of 12:13, 16 May 2012
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		+	Drug discovery is challenging because there are so many small molecules ...
		+
		+	Computation approach has potential to reduce ..
		+
	* [[Drug-target network]]		* [[Drug-target network]]

Drug-target network

2012-05-16T12:10:00Z

← Older revision		Revision as of 12:10, 16 May 2012
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-	A network between drugs and drug targets, first suggested in <ref name="YıldırımGoh2007" />.	+	A network between [[Drug\|drugs]] and drug targets, first suggested in <ref name="YıldırımGoh2007" />.

	If we predict a novel interaction between drugs and drug targets, it can lead to developments of new drugs. There are several prediction methods: networks based methods<ref name="AltmanCheng2012" />, ....		If we predict a novel interaction between drugs and drug targets, it can lead to developments of new drugs. There are several prediction methods: networks based methods<ref name="AltmanCheng2012" />, ....

Olfaction

2012-05-14T15:50:24Z

New page

* [[Wikipedia:Olfaction]]

A large-scale analysis of ORNs vs. odorants<ref name="NaraSaraiva2011" />.

==Databases==
* [http://senselab.med.yale.edu/ordb/info/ordb_resources.aspx ORDB]
* [http://bitterdb.agri.huji.ac.il/bitterdb/ BitterDB]

==References==
{{Reflist|refs=
<ref name="NaraSaraiva2011">{{cite journal|last1=Nara|first1=K.|last2=Saraiva|first2=L. R.|last3=Ye|first3=X.|last4=Buck|first4=L. B.|title=A Large-Scale Analysis of Odor Coding in the Olfactory Epithelium|journal=Journal of Neuroscience|volume=31|issue=25|year=2011|pages=9179–9191|issn=0270-6474|doi=10.1523/JNEUROSCI.1282-11.2011}}</ref>
}}

Music

2012-05-11T19:48:48Z

← Older revision		Revision as of 19:48, 11 May 2012
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	** [http://www.youtube.com/watch?v=X1QM6YZC45g Chopin, Nocturne, opus 27 #2]		** [http://www.youtube.com/watch?v=X1QM6YZC45g Chopin, Nocturne, opus 27 #2]
	* [http://www.bewitched.com/song.html The Shape of Song] by [[Martin Wattenberg]]		* [http://www.bewitched.com/song.html The Shape of Song] by [[Martin Wattenberg]]
		+
		+	==Courses==
		+	* [http://oyc.yale.edu/music/musi-112 Yale: MUSI 112: LISTENING TO MUSIC]

Massive open online course

2012-05-11T15:41:29Z

New page

* [[Wikipedia:Massive open online course]]

==Providers==
* https://www.coursera.org/
* http://www.udacity.com/
* http://bigdatauniversity.com/
* http://www.khanacademy.org/

Education

2012-05-11T15:40:34Z

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	* [[Science education]]		* [[Science education]]
		+	* [[Massive open online course]]

	==Articles==		==Articles==
	* [http://www.wired.com/wiredscience/2011/03/the-virtues-of-play/ The Virtues Of Play] by [[Jonah Lehrer]]		* [http://www.wired.com/wiredscience/2011/03/the-virtues-of-play/ The Virtues Of Play] by [[Jonah Lehrer]]

Fitts's law

2012-05-11T15:33:53Z

Created page with "* Wikipedia:Fitts's law ==Articles== * http://webdesign.tutsplus.com/articles/design-theory/applying-fitts-law-to-mobile-interface-design/"

New page

* [[Wikipedia:Fitts's law]]

==Articles==
* http://webdesign.tutsplus.com/articles/design-theory/applying-fitts-law-to-mobile-interface-design/

Semantic Web

2012-05-11T13:49:55Z

Created page with "* http://www.cambridgesemantics.com/semantic-university/the-semantic-web-landscape-a-practical-introduction"

New page

* http://www.cambridgesemantics.com/semantic-university/the-semantic-web-landscape-a-practical-introduction

Drug-target network

2012-05-10T21:31:26Z

Created page with "A network between drugs and drug targets, first suggested in <ref name="YıldırımGoh2007" />. If we predict a novel interaction between drugs and drug targets, it can lead to..."

New page

A network between drugs and drug targets, first suggested in <ref name="YıldırımGoh2007" />.

If we predict a novel interaction between drugs and drug targets, it can lead to developments of new drugs. There are several prediction methods: networks based methods<ref name="AltmanCheng2012" />, ....

==References==
{{Reflist|refs=
<ref name="YıldırımGoh2007">{{cite journal|last1=Yıldırım|first1=Muhammed A|last2=Goh|first2=Kwang-Il|last3=Cusick|first3=Michael E|last4=Barabási|first4=Albert-László|last5=Vidal|first5=Marc|title=Drug—target network|journal=Nature Biotechnology|volume=25|issue=10|year=2007|pages=1119–1126|issn=1087-0156|doi=10.1038/nbt1338}}</ref>
<ref name="AltmanCheng2012">{{cite journal|last1=Altman|first1=Russ B.|last2=Cheng|first2=Feixiong|last3=Liu|first3=Chuang|last4=Jiang|first4=Jing|last5=Lu|first5=Weiqiang|last6=Li|first6=Weihua|last7=Liu|first7=Guixia|last8=Zhou|first8=Weixing|last9=Huang|first9=Jin|last10=Tang|first10=Yun|title=Prediction of Drug-Target Interactions and Drug Repositioning via Network-Based Inference|journal=PLoS Computational Biology|volume=8|issue=5|year=2012|pages=e1002503|issn=1553-7358|doi=10.1371/journal.pcbi.1002503}}</ref>

}}

Drug

2012-05-10T21:28:40Z

← Older revision		Revision as of 21:28, 10 May 2012
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		+	* [[Drug-target network]]
		+
	==References==		==References==
	* http://www.sciencemag.org/content/321/5886/263.short		* http://www.sciencemag.org/content/321/5886/263.short
	* http://www.ncbi.nlm.nih.gov/pubmed/19701464		* http://www.ncbi.nlm.nih.gov/pubmed/19701464

Power law

2012-05-10T20:45:54Z

← Older revision		Revision as of 20:45, 10 May 2012
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		+	The most reliable way to test for a power-law distribution and estimate the exponent seems to be the [[MLE]] method suggested by [[Aaron Clauset]], [[Cosma Shalizi]], and [[Mark Newman]].
		+
	==Articles==		==Articles==
	* [http://cscs.umich.edu/~crshalizi/weblog/cat_power_laws.html power laws] by [[Cosma Shalizi]]		* [http://cscs.umich.edu/~crshalizi/weblog/cat_power_laws.html power laws] by [[Cosma Shalizi]]
	* [http://www.eecs.harvard.edu/~michaelm/postscripts/im2004a.pdf A Brief History of Generative Models for Power Law and Lognormal Distributions] by [[Michael Mitzenmacher]]		* [http://www.eecs.harvard.edu/~michaelm/postscripts/im2004a.pdf A Brief History of Generative Models for Power Law and Lognormal Distributions] by [[Michael Mitzenmacher]]
	** [http://exactitude.tistory.com/1037 seldon:최적화로 얻어진 거듭제곱 분포]		** [http://exactitude.tistory.com/1037 seldon:최적화로 얻어진 거듭제곱 분포]
		+
	==References==		==References==
	* http://tuvalu.santafe.edu/~aaronc/powerlaws/		* http://tuvalu.santafe.edu/~aaronc/powerlaws/
	* http://cscs.umich.edu/~crshalizi/notebooks/power-laws.html		* http://cscs.umich.edu/~crshalizi/notebooks/power-laws.html

Power-law

2012-05-10T20:44:13Z

Redirected page to Power law

New page

#redirect [[Power law]]

Maximum likelihood

2012-05-10T20:44:02Z

New page

* [[Wikipedia:Maximum likelihood]]
* [[Power-law]]

In some cases it is not very reliable<ref name="StillerKück2012" />? Is it true for general cases?

==References==
{{Reflist|refs=
<ref name="StillerKück2012">{{cite journal|last1=Stiller|first1=John W.|last2=Kück|first2=Patrick|last3=Mayer|first3=Christoph|last4=Wägele|first4=Johann-Wolfgang|last5=Misof|first5=Bernhard|title=Long Branch Effects Distort Maximum Likelihood Phylogenies in Simulations Despite Selection of the Correct Model|journal=PLoS ONE|volume=7|issue=5|year=2012|pages=e36593|issn=1932-6203|doi=10.1371/journal.pone.0036593}}</ref>
}}

MLE

2012-05-10T20:42:03Z

Redirected page to Maximum likelihood

New page

#redirect [[Maximum likelihood]]

FutureGrid

2012-05-10T20:31:59Z

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	==Docs==		==Docs==
	* https://portal.futuregrid.org/manual		* https://portal.futuregrid.org/manual
		+	** [https://portal.futuregrid.org/overview-0 cloud services]

Food science

2012-05-10T20:30:44Z

← Older revision		Revision as of 20:30, 10 May 2012
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	* [[Food chemistry]]		* [[Food chemistry]]
		+
		+	==Resources==
		+	* [http://www.londongastronomyseminars.com/index.htm The London Gastronomy Seminars]

	==Books==		==Books==

FutureGrid

2012-05-10T20:28:36Z

← Older revision		Revision as of 20:28, 10 May 2012
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	==Docs==		==Docs==
-	* https://portal.futuregrid.org/~~gettingstarted~~	+	* https://portal.futuregrid.org/manual

Community structure

2012-05-10T18:40:52Z

References:

← Older revision		Revision as of 18:40, 10 May 2012
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	<ref name="leicht2008">{{cite journal \|author=[[Elizabeth Leicht]] and [[Mark Newman]] \|year=2008 \|title=Community structure in directed networks \|journal=[[Phys. Rev. Lett.]] \|volume=100 \|issue= \|pages=118703 \|publisher= \|doi=10.1103/PhysRevLett.100.118703 \|pmid= \|pmc= \|url=http://arxiv.org/abs/0709.4500 \|accessdate= }}</ref>		<ref name="leicht2008">{{cite journal \|author=[[Elizabeth Leicht]] and [[Mark Newman]] \|year=2008 \|title=Community structure in directed networks \|journal=[[Phys. Rev. Lett.]] \|volume=100 \|issue= \|pages=118703 \|publisher= \|doi=10.1103/PhysRevLett.100.118703 \|pmid= \|pmc= \|url=http://arxiv.org/abs/0709.4500 \|accessdate= }}</ref>
	}}		}}
		+
		+
		+	* [http://pre.aps.org/abstract/PRE/v85/i5/e056109 Community structure and scale-free collections of Erdős-Rényi graphs]

Sentiment analysis

2012-05-10T18:39:23Z

References:

← Older revision		Revision as of 18:39, 10 May 2012
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	* [http://www.cs.cornell.edu/home/llee/papers/sentiment.pdf Thumbs up? Sentiment Classification using Machine Learning Techniques]		* [http://www.cs.cornell.edu/home/llee/papers/sentiment.pdf Thumbs up? Sentiment Classification using Machine Learning Techniques]
	* [http://www.snsoroka.com/files/2012YoungSoroka(PolComm).pdf Affective News: The Automated Coding of Sentiment in Political Texts]		* [http://www.snsoroka.com/files/2012YoungSoroka(PolComm).pdf Affective News: The Automated Coding of Sentiment in Political Texts]
		+	* [http://www.nature.com/srep/2012/120510/srep00402/full/srep00402.html Emotional persistence in online chatting communities]

Group evolution

2012-05-10T18:38:40Z

← Older revision		Revision as of 18:38, 10 May 2012
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		+	<ref name="zhang2012" />

	==References==		==References==
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	* [http://www.sciencemag.org/content/328/5980/876.full Community Structure in Time-Dependent, Multiscale, and Multiplex Networks]		* [http://www.sciencemag.org/content/328/5980/876.full Community Structure in Time-Dependent, Multiscale, and Multiplex Networks]
	* [http://www.springerlink.com/content/d6771886878t8p10/ GED: the method for group evolution discovery in social networks]		* [http://www.springerlink.com/content/d6771886878t8p10/ GED: the method for group evolution discovery in social networks]
		+	{{Reflist\|refs=
		+	<ref name="zhang2012">{{cite journal\|doi=10.1103/PhysRevE.85.056110}}</ref>
		+	}}